WormBase Tree Display for CDS: PPA00244
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| PPA00244 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (26) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-32.50 | ||
| DB_remark | PPA-TBCK-1 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF00566 (Rab-GTPase-TBC domain), PF00581 (Rhodanese-like domain); contains similarity to Interpro domains IPR000195 (Rab-GAP-TBC domain), IPR011009 (Protein kinase-like domain superfamily), IPR035969 (Rab-GAP-TBC domain superfamily), IPR036873 (Rhodanese-like domain superfamily), IPR001763 (Rhodanese-like domain), IPR000719 (Protein kinase domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00089798 | ||||
| Corresponding_transcript | PPA00244.1 | |||||
| Corresponding_protein | PP67364 | |||||
| Corresponding_oligo_set | GPL14372_Probes_55319 | |||||
| GPL14372_Probes_55320 | ||||||
| GPL14372_Probes_55321 | ||||||
| GPL14372_Probes_55322 | ||||||
| Matching_cDNA | FG106751 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_55319 | |||||
| GPL14372_Probes_55320 | ||||||
| GPL14372_Probes_55321 | ||||||
| GPL14372_Probes_55322 | ||||||
| RNASeq_FPKM | WBls:0000032 | 2.64037 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-32.50 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
