WormBase Tree Display for CDS: PPA00264
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PPA00264 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S57-34.14 | ||
TREEFAM | TREEFAM_ID | TF315716 | ||||
DB_remark | PPA-FAX-1 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR001723 (Nuclear hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00089818 | ||||
Corresponding_transcript | PPA00264.1 | |||||
Corresponding_protein | PP56659 | |||||
Corresponding_oligo_set | GPL14372_Probes_55351 | |||||
GPL14372_Probes_55352 | ||||||
GPL14372_Probes_55353 | ||||||
Microarray_results | GPL14372_Probes_55351 | |||||
GPL14372_Probes_55352 | ||||||
GPL14372_Probes_55353 | ||||||
RNASeq_FPKM | WBls:0000032 | 13.8565 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S57-34.14 | Curator_confirmed | WBPerson4055 | |||
Method | curated |