WormBase Tree Display for CDS: PPA00268
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| PPA00268 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (104) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-35.0 | ||
| DB_remark | contains similarity to Pfam domains PF00170 (bZIP transcription factor), PF00566 (Rab-GTPase-TBC domain), PF13271 (Domain of unknown function (DUF4062)); contains similarity to Interpro domains IPR000195 (Rab-GAP-TBC domain), IPR025139 (Domain of unknown function DUF4062), IPR035969 (Rab-GAP-TBC domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001680 (WD40 repeat), IPR011047 (Quinoprotein alcohol dehydrogenase-like superfamily), IPR004827 (Basic-leucine zipper domain), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00089822 | ||||
| Corresponding_transcript | PPA00268.1 | |||||
| Corresponding_protein | PP53361 | |||||
| Corresponding_oligo_set (14) | ||||||
| Matching_cDNA | FG103497 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results (14) | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.736504 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0.434865 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-35.0 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
