WormBase Tree Display for CDS: PPA00310
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PPA00310 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 123 | |||
206 | 283 | |||||
367 | 1017 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S273-6.12 | ||
DB_remark | contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00089864 | ||||
Corresponding_transcript | PPA00310.1 | |||||
Corresponding_protein | PP47874 | |||||
Matching_cDNA | CN656931 | Inferred_automatically | transcript_builder.pl | |||
AI989051 | Inferred_automatically | transcript_builder.pl | ||||
AI986760 | Inferred_automatically | transcript_builder.pl | ||||
BI500542 | Inferred_automatically | transcript_builder.pl | ||||
AW097112 | Inferred_automatically | transcript_builder.pl | ||||
FE935336 | Inferred_automatically | transcript_builder.pl | ||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S273-6.12 | Curator_confirmed | WBPerson4055 | |||
Method | curated |