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WormBase Tree Display for CDS: PPA00330

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Name Class

PPA00330SMapS_parentSequencePPA_ChrI
StructureSource_exons (15)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-38.1
TREEFAMTREEFAM_IDTF103044
DB_remarkPPA-RPB-11 protein; contains similarity to Pfam domains PF08574 (Transcription factor Iwr1), PF13656 (RNA polymerase Rpb3/Rpb11 dimerisation domain); contains similarity to Interpro domains IPR013883 (Transcription factor Iwr1 domain), IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain), IPR036603 (RNA polymerase, RBP11-like subunit)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00089884
Corresponding_transcriptPPA00330.1
Corresponding_proteinPP67585
Corresponding_oligo_setGPL14372_Probes_55473
GPL14372_Probes_55474
GPL14372_Probes_55475
GPL14372_Probes_55477
GPL14372_Probes_55479
GPL14372_Probes_55480
GPL14372_Probes_55481
Matching_cDNAFE934743Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_55473
GPL14372_Probes_55474
GPL14372_Probes_55475
GPL14372_Probes_55477
GPL14372_Probes_55479
GPL14372_Probes_55480
GPL14372_Probes_55481
RNASeq_FPKMWBls:000003268.9865From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:0000101136.883From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S57-38.1Curator_confirmedWBPerson4055
Methodcurated