WormBase Tree Display for CDS: PPA00330
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PPA00330 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-38.1 | ||
TREEFAM | TREEFAM_ID | TF103044 | ||||
DB_remark | PPA-RPB-11 protein; contains similarity to Pfam domains PF08574 (Transcription factor Iwr1), PF13656 (RNA polymerase Rpb3/Rpb11 dimerisation domain); contains similarity to Interpro domains IPR013883 (Transcription factor Iwr1 domain), IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain), IPR036603 (RNA polymerase, RBP11-like subunit) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00089884 | ||||
Corresponding_transcript | PPA00330.1 | |||||
Corresponding_protein | PP67585 | |||||
Corresponding_oligo_set | GPL14372_Probes_55473 | |||||
GPL14372_Probes_55474 | ||||||
GPL14372_Probes_55475 | ||||||
GPL14372_Probes_55477 | ||||||
GPL14372_Probes_55479 | ||||||
GPL14372_Probes_55480 | ||||||
GPL14372_Probes_55481 | ||||||
Matching_cDNA | FE934743 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_55473 | |||||
GPL14372_Probes_55474 | ||||||
GPL14372_Probes_55475 | ||||||
GPL14372_Probes_55477 | ||||||
GPL14372_Probes_55479 | ||||||
GPL14372_Probes_55480 | ||||||
GPL14372_Probes_55481 | ||||||
RNASeq_FPKM | WBls:0000032 | 68.9865 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 136.883 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-38.1 | Curator_confirmed | WBPerson4055 | |||
Method | curated |