WormBase Tree Display for CDS: PPA00336
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PPA00336 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (19) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-38.4 | ||
TREEFAM | TREEFAM_ID | TF105207 | ||||
DB_remark | PPA-ABCF-1 protein; contains similarity to Pfam domain PF00005 (ABC transporter); contains similarity to Interpro domains IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR003439 (ABC transporter-like, ATP-binding domain), IPR003593 (AAA+ ATPase domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00089890 | ||||
Corresponding_transcript | PPA00336.1 | |||||
Corresponding_protein | PP61136 | |||||
Corresponding_oligo_set | GPL14372_Probes_55494 | |||||
GPL14372_Probes_55495 | ||||||
GPL14372_Probes_55496 | ||||||
GPL14372_Probes_55497 | ||||||
GPL14372_Probes_55498 | ||||||
GPL14372_Probes_55499 | ||||||
GPL14372_Probes_55500 | ||||||
GPL14372_Probes_55501 | ||||||
Matching_cDNA | AW052727 | Inferred_automatically | transcript_builder.pl | |||
FG096698 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_55494 | |||||
GPL14372_Probes_55495 | ||||||
GPL14372_Probes_55496 | ||||||
GPL14372_Probes_55497 | ||||||
GPL14372_Probes_55498 | ||||||
GPL14372_Probes_55499 | ||||||
GPL14372_Probes_55500 | ||||||
GPL14372_Probes_55501 | ||||||
RNASeq_FPKM | WBls:0000032 | 12.5223 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 8.45078 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-38.4 | Curator_confirmed | WBPerson4055 | |||
Method | curated |