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WormBase Tree Display for CDS: PPA00336

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Name Class

PPA00336SMapS_parentSequencePPA_ChrI
StructureSource_exons (19)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-38.4
TREEFAMTREEFAM_IDTF105207
DB_remarkPPA-ABCF-1 protein; contains similarity to Pfam domain PF00005 (ABC transporter); contains similarity to Interpro domains IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR003439 (ABC transporter-like, ATP-binding domain), IPR003593 (AAA+ ATPase domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00089890
Corresponding_transcriptPPA00336.1
Corresponding_proteinPP61136
Corresponding_oligo_setGPL14372_Probes_55494
GPL14372_Probes_55495
GPL14372_Probes_55496
GPL14372_Probes_55497
GPL14372_Probes_55498
GPL14372_Probes_55499
GPL14372_Probes_55500
GPL14372_Probes_55501
Matching_cDNAAW052727Inferred_automaticallytranscript_builder.pl
FG096698Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_55494
GPL14372_Probes_55495
GPL14372_Probes_55496
GPL14372_Probes_55497
GPL14372_Probes_55498
GPL14372_Probes_55499
GPL14372_Probes_55500
GPL14372_Probes_55501
RNASeq_FPKMWBls:000003212.5223From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001018.45078From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S57-38.4Curator_confirmedWBPerson4055
Methodcurated