WormBase Tree Display for CDS: PPA00348
expand all nodes | collapse all nodes | view schema
| PPA00348 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (22) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-38.20 | ||
| TREEFAM | TREEFAM_ID | TF300457 | ||||
| DB_remark | PPA-RUVB-1 protein; contains similarity to Pfam domains PF03332 (Eukaryotic phosphomannomutase), PF06068 (TIP49 P-loop domain), PF17856 (TIP49 AAA-lid domain); contains similarity to Interpro domains IPR036412 (HAD-like superfamily), IPR041048 (RuvB-like, AAA-lid domain), IPR027238 (RuvB-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR043169 (Phosphomannomutase, cap domain), IPR037938 (), IPR023214 (HAD superfamily), IPR010339 (TIP49, P-loop domain), IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR005002 (Phosphomannomutase), IPR012340 (Nucleic acid-binding, OB-fold), IPR042487 (RuvBL1/2, DNA/RNA binding domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| End_not_found | ||||||
| Visible | Gene | WBGene00089902 | ||||
| Corresponding_transcript | PPA00348.1 | |||||
| Corresponding_protein | PP57898 | |||||
| Corresponding_oligo_set | GPL14372_Probes_55517 | |||||
| GPL14372_Probes_55518 | ||||||
| GPL14372_Probes_55519 | ||||||
| GPL14372_Probes_55521 | ||||||
| GPL14372_Probes_55522 | ||||||
| GPL14372_Probes_55523 | ||||||
| GPL14372_Probes_55524 | ||||||
| Matching_cDNA | AW097370 | Inferred_automatically | transcript_builder.pl | |||
| CN657398 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_55517 | |||||
| GPL14372_Probes_55518 | ||||||
| GPL14372_Probes_55519 | ||||||
| GPL14372_Probes_55521 | ||||||
| GPL14372_Probes_55522 | ||||||
| GPL14372_Probes_55523 | ||||||
| GPL14372_Probes_55524 | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.43072 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.68963 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-38.20 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
