WormBase Tree Display for CDS: PPA00410
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PPA00410 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (64) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-52.31 | ||
DB_remark | contains similarity to Pfam domains PF01697 (Glycosyltransferase family 92), PF02463 (RecF/RecN/SMC N terminal domain), PF06470 (SMC proteins Flexible Hinge Domain); contains similarity to Interpro domains IPR003395 (RecF/RecN/SMC, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR036277 (SMCs flexible hinge superfamily), IPR010935 (SMCs flexible hinge), IPR008166 (Glycosyltransferase family 92) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00089964 | ||||
Corresponding_transcript | PPA00410.1 | |||||
Corresponding_protein | PP73411 | |||||
Corresponding_oligo_set (14) | ||||||
Matching_cDNA | FE940685 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (14) | ||||||
RNASeq_FPKM | WBls:0000032 | 14.2558 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 2.58996 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-52.31 | Curator_confirmed | WBPerson4055 | |||
Method | curated |