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WormBase Tree Display for CDS: PPA00456

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Name Class

PPA00456SMapS_parentSequencePPA_ChrI
StructureSource_exons1102
308375
776885
11751312
15832007
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-45.46
DB_remarkcontains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00090010
Corresponding_transcriptPPA00456.1
Corresponding_proteinPP58534
Corresponding_oligo_setGPL14372_Probes_9918
Microarray_resultsGPL14372_Probes_9918
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S57-45.46Curator_confirmedWBPerson4055
Methodcurated