WormBase Tree Display for CDS: PPA00475
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PPA00475 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (53) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-46.27 | ||
TREEFAM | TREEFAM_ID | TF300451 | ||||
DB_remark | PPA-VPS-41 protein; contains similarity to Pfam domain PF00637 (Region in Clathrin and VPS); contains similarity to Interpro domains IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR036322 (WD40-repeat-containing domain superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00090029 | ||||
Corresponding_transcript | PPA00475.1 | |||||
Corresponding_protein | PP63361 | |||||
Corresponding_oligo_set | GPL14372_Probes_55735 | |||||
Microarray_results | GPL14372_Probes_55735 | |||||
RNASeq_FPKM | WBls:0000032 | 1.54074 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-46.27 | Curator_confirmed | WBPerson4055 | |||
Method | curated |