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WormBase Tree Display for CDS: PPA00475

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Name Class

PPA00475SMapS_parentSequencePPA_ChrI
StructureSource_exons (53)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-46.27
TREEFAMTREEFAM_IDTF300451
DB_remarkPPA-VPS-41 protein; contains similarity to Pfam domain PF00637 (Region in Clathrin and VPS); contains similarity to Interpro domains IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR036322 (WD40-repeat-containing domain superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
Start_not_found1
VisibleGeneWBGene00090029
Corresponding_transcriptPPA00475.1
Corresponding_proteinPP63361
Corresponding_oligo_setGPL14372_Probes_55735
Microarray_resultsGPL14372_Probes_55735
RNASeq_FPKMWBls:00000321.54074From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S57-46.27Curator_confirmedWBPerson4055
Methodcurated