WormBase Tree Display for CDS: PPA00494
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| PPA00494 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (37) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-47.22 | ||
| TREEFAM | TREEFAM_ID | TF314942 | ||||
| DB_remark | PPA-LEV-8 protein; contains similarity to Pfam domains PF00657 (GDSL-like Lipase/Acylhydrolase), PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR001087 (GDSL lipase/esterase), IPR036514 (SGNH hydrolase superfamily), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR002394 (Nicotinic acetylcholine receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00090048 | ||||
| Corresponding_transcript | PPA00494.1 | |||||
| Corresponding_protein | PP59855 | |||||
| Corresponding_oligo_set | GPL14372_Probes_55762 | |||||
| GPL14372_Probes_55763 | ||||||
| GPL14372_Probes_55764 | ||||||
| GPL14372_Probes_55765 | ||||||
| GPL14372_Probes_55766 | ||||||
| GPL14372_Probes_55767 | ||||||
| GPL14372_Probes_55768 | ||||||
| GPL14372_Probes_55770 | ||||||
| GPL14372_Probes_55771 | ||||||
| GPL14372_Probes_55772 | ||||||
| Microarray_results | GPL14372_Probes_55762 | |||||
| GPL14372_Probes_55763 | ||||||
| GPL14372_Probes_55764 | ||||||
| GPL14372_Probes_55765 | ||||||
| GPL14372_Probes_55766 | ||||||
| GPL14372_Probes_55767 | ||||||
| GPL14372_Probes_55768 | ||||||
| GPL14372_Probes_55770 | ||||||
| GPL14372_Probes_55771 | ||||||
| GPL14372_Probes_55772 | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.04779 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 3.71213 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-47.22 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
