WormBase Tree Display for CDS: PPA00540

PPA00540 SMap: S_parent: Sequence: PPA_ChrI
  Structure: Source_exons: 1 23
      115 235
      304 351
      421 516
      765 896
      1034 1153
      1431 1508
  DB_info: Database: pristionchus.org cds gene-UMA-S473-0.25
    DB_remark: PPA-RAB-1 protein; contains similarity to Pfam domain PF00071 (Ras family); contains similarity to Interpro domains IPR001806 (Small GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR005225 (Small GTP-binding protein domain)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Confirmed
  Visible: Gene: WBGene00090094
    Corresponding_transcript: PPA00540.1
    Corresponding_protein: PP17278
    Corresponding_oligo_set: GPL14372_Probes_55843
      GPL14372_Probes_55845
    Matching_cDNA: CN442719 Inferred_automatically: transcript_builder.pl
      FG097497 Inferred_automatically: transcript_builder.pl
      FE935993 Inferred_automatically: transcript_builder.pl
      FG101809 Inferred_automatically: transcript_builder.pl
      FG098388 Inferred_automatically: transcript_builder.pl
      AW114993 Inferred_automatically: transcript_builder.pl
      FG100354 Inferred_automatically: transcript_builder.pl
      FG100109 Inferred_automatically: transcript_builder.pl
      FG098023 Inferred_automatically: transcript_builder.pl
      FG100366 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14372_Probes_55843
      GPL14372_Probes_55845
    RNASeq_FPKM: WBls:0000032 84.5247 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 109.347 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Remark: [171116 mh6] renamed from gene-UMA-S473-0.25 Curator_confirmed: WBPerson4055
  Method: curated