WormBase Tree Display for CDS: PPA01045
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| PPA01045 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrV | |||
| Structure | Source_exons (66) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S325-3.17 | ||
| DB_remark | PPA-UNC-73 protein; contains similarity to Pfam domains PF00621 (RhoGEF domain), PF07653 (Variant SH3 domain); contains similarity to Interpro domains IPR001251 (CRAL-TRIO lipid binding domain), IPR036028 (SH3-like domain superfamily), IPR000219 (Dbl homology (DH) domain), IPR035899 (Dbl homology (DH) domain superfamily), IPR001849 (Pleckstrin homology domain), IPR001452 (SH3 domain), IPR013783 (Immunoglobulin-like fold), IPR011993 (PH-like domain superfamily), IPR036179 (Immunoglobulin-like domain superfamily), IPR036116 (Fibronectin type III superfamily), IPR036865 (CRAL-TRIO lipid binding domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00090599 | ||||
| Corresponding_transcript | PPA01045.1 | |||||
| Corresponding_protein | PP75374 | |||||
| Corresponding_oligo_set (18) | ||||||
| Microarray_results (18) | ||||||
| RNASeq_FPKM | WBls:0000032 | 18.3836 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 3.79909 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 19 Sep 2019 14:49:11 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S325-3.17 | Curator_confirmed | WBPerson4055 | |||
| [190919 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
