WormBase Tree Display for CDS: PPA01560
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PPA01560 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons (52) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2854-15.45 | ||
DB_remark | contains similarity to Pfam domains PF03399 (SAC3/GANP family), PF08585 (RMI1, N-terminal OB-fold domain); contains similarity to Interpro domains IPR042470 (RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily), IPR005062 (SAC3/GANP/THP3, conserved domain), IPR033472 (), IPR013894 (RecQ mediated genome instability protein 1, OB-fold domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00091114 | ||||
Corresponding_transcript | PPA01560.1 | |||||
Corresponding_protein | PP71552 | |||||
Corresponding_oligo_set | GPL14372_Probes_52617 | |||||
GPL14372_Probes_52618 | ||||||
GPL14372_Probes_52619 | ||||||
GPL14372_Probes_52620 | ||||||
GPL14372_Probes_52621 | ||||||
GPL14372_Probes_52624 | ||||||
GPL14372_Probes_52625 | ||||||
Matching_cDNA | FG102232 | Inferred_automatically | transcript_builder.pl | |||
AW114536 | Inferred_automatically | transcript_builder.pl | ||||
FE934179 | Inferred_automatically | transcript_builder.pl | ||||
AI988982 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_52617 | |||||
GPL14372_Probes_52618 | ||||||
GPL14372_Probes_52619 | ||||||
GPL14372_Probes_52620 | ||||||
GPL14372_Probes_52621 | ||||||
GPL14372_Probes_52624 | ||||||
GPL14372_Probes_52625 | ||||||
RNASeq_FPKM | WBls:0000032 | 2.20933 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 6.52252 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2854-15.45 | Curator_confirmed | WBPerson4055 | |||
Method | curated |