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WormBase Tree Display for CDS: PPA01560

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Name Class

PPA01560SMapS_parentSequencePPA_ChrIV
StructureSource_exons (52)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2854-15.45
DB_remarkcontains similarity to Pfam domains PF03399 (SAC3/GANP family), PF08585 (RMI1, N-terminal OB-fold domain); contains similarity to Interpro domains IPR042470 (RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily), IPR005062 (SAC3/GANP/THP3, conserved domain), IPR033472 (), IPR013894 (RecQ mediated genome instability protein 1, OB-fold domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00091114
Corresponding_transcriptPPA01560.1
Corresponding_proteinPP71552
Corresponding_oligo_setGPL14372_Probes_52617
GPL14372_Probes_52618
GPL14372_Probes_52619
GPL14372_Probes_52620
GPL14372_Probes_52621
GPL14372_Probes_52624
GPL14372_Probes_52625
Matching_cDNAFG102232Inferred_automaticallytranscript_builder.pl
AW114536Inferred_automaticallytranscript_builder.pl
FE934179Inferred_automaticallytranscript_builder.pl
AI988982Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_52617
GPL14372_Probes_52618
GPL14372_Probes_52619
GPL14372_Probes_52620
GPL14372_Probes_52621
GPL14372_Probes_52624
GPL14372_Probes_52625
RNASeq_FPKMWBls:00000322.20933From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001016.52252From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S2854-15.45Curator_confirmedWBPerson4055
Methodcurated