WormBase Tree Display for CDS: PPA01683
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PPA01683 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 48 | |||
254 | 338 | |||||
813 | 905 | |||||
1346 | 1470 | |||||
1688 | 1759 | |||||
3340 | 3465 | |||||
3740 | 3811 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-3.13 | ||
TREEFAM | TREEFAM_ID | TF353041 | ||||
DB_remark | contains similarity to Pfam domains PF02798 (Glutathione S-transferase, N-terminal domain), PF14497 (Glutathione S-transferase, C-terminal domain); contains similarity to Interpro domains IPR004046 (Glutathione S-transferase, C-terminal), IPR004045 (Glutathione S-transferase, N-terminal), IPR036282 (Glutathione S-transferase, C-terminal domain superfamily), IPR036249 (Thioredoxin-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00091237 | ||||
Corresponding_transcript | PPA01683.1 | |||||
Corresponding_protein | PP47942 | |||||
Corresponding_oligo_set | GPL14372_Probes_82394 | |||||
GPL14372_Probes_82395 | ||||||
Microarray_results | GPL14372_Probes_82394 | |||||
GPL14372_Probes_82395 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-3.13 | Curator_confirmed | WBPerson4055 | |||
Method | curated |