WormBase Tree Display for CDS: PPA01826
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| PPA01826 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (50) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S259-4.24 | ||
| DB_remark | contains similarity to Pfam domain PF00155 (Aminotransferase class I and II); contains similarity to Interpro domains IPR015424 (Pyridoxal phosphate-dependent transferase), IPR004839 (Aminotransferase, class I/classII), IPR015421 (Pyridoxal phosphate-dependent transferase, major domain), IPR015422 (Pyridoxal phosphate-dependent transferase, small domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00091380 | ||||
| Corresponding_transcript | PPA01826.1 | |||||
| Corresponding_protein | PP60168 | |||||
| Corresponding_oligo_set | GPL14372_Probes_62458 | |||||
| GPL14372_Probes_62459 | ||||||
| GPL14372_Probes_62460 | ||||||
| GPL14372_Probes_62461 | ||||||
| GPL14372_Probes_62462 | ||||||
| GPL14372_Probes_62463 | ||||||
| GPL14372_Probes_62464 | ||||||
| GPL14372_Probes_62465 | ||||||
| Microarray_results | GPL14372_Probes_62458 | |||||
| GPL14372_Probes_62459 | ||||||
| GPL14372_Probes_62460 | ||||||
| GPL14372_Probes_62461 | ||||||
| GPL14372_Probes_62462 | ||||||
| GPL14372_Probes_62463 | ||||||
| GPL14372_Probes_62464 | ||||||
| GPL14372_Probes_62465 | ||||||
| RNASeq_FPKM | WBls:0000032 | 9.48533 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0.448045 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S259-4.24 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
