WormBase Tree Display for CDS: PPA01831
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PPA01831 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (35) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S259-5.2 | ||
DB_remark | PPA-SIPA-1 protein; contains similarity to Pfam domain PF02145 (Rap/ran-GAP); contains similarity to Interpro domains IPR001478 (PDZ domain), IPR036034 (PDZ superfamily), IPR000331 (Rap/Ran-GAP domain), IPR035974 (Rap/Ran-GAP superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00091385 | ||||
Corresponding_transcript | PPA01831.1 | |||||
Corresponding_protein | PP68416 | |||||
Corresponding_oligo_set | GPL14372_Probes_15387 | |||||
GPL14372_Probes_15388 | ||||||
GPL14372_Probes_15389 | ||||||
GPL14372_Probes_15390 | ||||||
GPL14372_Probes_62468 | ||||||
Microarray_results | GPL14372_Probes_15387 | |||||
GPL14372_Probes_15388 | ||||||
GPL14372_Probes_15389 | ||||||
GPL14372_Probes_15390 | ||||||
GPL14372_Probes_62468 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 1.32095 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S259-5.2 | Curator_confirmed | WBPerson4055 | |||
Method | curated |