WormBase Tree Display for CDS: PPA01865
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| PPA01865 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (24) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S259-6.0 | ||
| DB_remark | PPA-RBM-25 protein; contains similarity to Pfam domain PF01480 (PWI domain); contains similarity to Interpro domains IPR002483 (PWI domain), IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR036483 (PWI domain superfamily), IPR000504 (RNA recognition motif domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00091419 | ||||
| Corresponding_transcript | PPA01865.1 | |||||
| Corresponding_protein | PP75157 | |||||
| Corresponding_oligo_set | GPL14372_Probes_62556 | |||||
| GPL14372_Probes_62559 | ||||||
| GPL14372_Probes_62560 | ||||||
| Microarray_results | GPL14372_Probes_62556 | |||||
| GPL14372_Probes_62559 | ||||||
| GPL14372_Probes_62560 | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.64495 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 5.82799 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 16 Sep 2019 14:22:46 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S259-6.0 | Curator_confirmed | WBPerson4055 | |||
| [190916 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
