WormBase Tree Display for CDS: PPA01867

PPA01867 Evidence: Curator_confirmed: WBPerson4055
  SMap: S_parent: Sequence: PPA_ChrI
  Structure: Source_exons: 1 50
      694 790
      1795 1901
      1964 2042
      2827 2940
      3044 3148
      3192 3250
      4615 4727
      4773 4861
      4958 5104
  DB_info: Database: pristionchus.org cds gene-UMM-S259-6.7
      TREEFAM TREEFAM_ID TF300610
    DB_remark: PPA-USP-39 protein; contains similarity to Pfam domains PF00046 (Homeodomain), PF16878 (Transcriptional regulator, SIX1, N-terminal SD domain); contains similarity to Interpro domains IPR031701 (Homeobox protein SIX1, N-terminal SD domain), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Predicted
  Visible: Gene: WBGene00091421
    Corresponding_transcript: PPA01867.1
    Corresponding_protein: PP75436
    Corresponding_oligo_set: GPL14372_Probes_62576
      GPL14372_Probes_62577
      GPL14372_Probes_62578
      GPL14372_Probes_62579
      GPL14372_Probes_62580
    Microarray_results: GPL14372_Probes_62576
      GPL14372_Probes_62577
      GPL14372_Probes_62578
      GPL14372_Probes_62579
      GPL14372_Probes_62580
    RNASeq_FPKM: WBls:0000032 0 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 5.03674 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Last_reviewed: 16 Sep 2019 14:26:37 WBPerson4055
    Remark: [171116 mh6] renamed from gene-UMM-S259-6.7 Curator_confirmed: WBPerson4055
      [190916 mh6] This CDS has been updated based on the RNAseq data. Curator_confirmed: WBPerson4055
        From_analysis: RNASeq
  Method: curated