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WormBase Tree Display for CDS: PPA01870

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Name Class

PPA01870SMapS_parentSequencePPA_ChrI
StructureSource_exons (23)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S259-6.8
TREEFAMTREEFAM_IDTF314313
DB_remarkPPA-HEX-5 protein; contains similarity to Pfam domain PF00728 (Glycosyl hydrolase family 20, catalytic domain); contains similarity to Interpro domains IPR015883 (Glycoside hydrolase family 20, catalytic domain), IPR017853 (Glycoside hydrolase superfamily), IPR038901 (Hexosaminidase D-like)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00091424
Corresponding_transcriptPPA01870.1
Corresponding_proteinPP53944
Corresponding_oligo_setGPL14372_Probes_62586
GPL14372_Probes_62587
GPL14372_Probes_62588
GPL14372_Probes_62589
Microarray_resultsGPL14372_Probes_62586
GPL14372_Probes_62587
GPL14372_Probes_62588
GPL14372_Probes_62589
RNASeq_FPKMWBls:000003214.4878From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S259-6.8Curator_confirmedWBPerson4055
Methodcurated