WormBase Tree Display for CDS: PPA01870
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PPA01870 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (23) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S259-6.8 | ||
TREEFAM | TREEFAM_ID | TF314313 | ||||
DB_remark | PPA-HEX-5 protein; contains similarity to Pfam domain PF00728 (Glycosyl hydrolase family 20, catalytic domain); contains similarity to Interpro domains IPR015883 (Glycoside hydrolase family 20, catalytic domain), IPR017853 (Glycoside hydrolase superfamily), IPR038901 (Hexosaminidase D-like) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00091424 | ||||
Corresponding_transcript | PPA01870.1 | |||||
Corresponding_protein | PP53944 | |||||
Corresponding_oligo_set | GPL14372_Probes_62586 | |||||
GPL14372_Probes_62587 | ||||||
GPL14372_Probes_62588 | ||||||
GPL14372_Probes_62589 | ||||||
Microarray_results | GPL14372_Probes_62586 | |||||
GPL14372_Probes_62587 | ||||||
GPL14372_Probes_62588 | ||||||
GPL14372_Probes_62589 | ||||||
RNASeq_FPKM | WBls:0000032 | 14.4878 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S259-6.8 | Curator_confirmed | WBPerson4055 | |||
Method | curated |