WormBase Tree Display for CDS: PPA01916
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PPA01916 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (109) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S259-8.9 | ||
DB_remark | contains similarity to Pfam domains PF00858 (Amiloride-sensitive sodium channel), PF01663 (Type I phosphodiesterase / nucleotide pyrophosphatase), PF08217 (); contains similarity to Interpro domains IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase), IPR013176 (Vacuolar fusion protein Ccz1), IPR001873 (Epithelial sodium channel), IPR017850 (Alkaline-phosphatase-like, core domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00091470 | ||||
Corresponding_transcript | PPA01916.1 | |||||
Corresponding_protein | PP56590 | |||||
Corresponding_oligo_set (22) | ||||||
Microarray_results (22) | ||||||
RNASeq_FPKM | WBls:0000032 | 4.66255 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 1.83531 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S259-8.9 | Curator_confirmed | WBPerson4055 | |||
Method | curated |