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WormBase Tree Display for CDS: PPA01923

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Name Class

PPA01923SMapS_parentSequencePPA_ChrI
StructureSource_exons181
242301
454506
797881
11901261
15151625
DB_infoDatabasepristionchus.orgcdsgene-UMS-S259-9.18
TREEFAMTREEFAM_IDTF353069
DB_remarkPPA-HINT-3 protein; contains similarity to Pfam domain PF11969 (Scavenger mRNA decapping enzyme C-term binding); contains similarity to Interpro domains IPR001310 (Histidine triad (HIT) protein), IPR036265 (HIT-like superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00091477
Corresponding_transcriptPPA01923.1
Corresponding_proteinPP12142
Corresponding_oligo_setGPL14372_Probes_62730
GPL14372_Probes_62732
GPL14372_Probes_62733
Matching_cDNAAW097290Inferred_automaticallytranscript_builder.pl
FG096036Inferred_automaticallytranscript_builder.pl
CN657472Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_62730
GPL14372_Probes_62732
GPL14372_Probes_62733
RNASeq_FPKMWBls:000003266.4534From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010195.3173From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMS-S259-9.18Curator_confirmedWBPerson4055
Methodcurated