WormBase Tree Display for CDS: PPA01923
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PPA01923 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 81 | |||
242 | 301 | |||||
454 | 506 | |||||
797 | 881 | |||||
1190 | 1261 | |||||
1515 | 1625 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S259-9.18 | ||
TREEFAM | TREEFAM_ID | TF353069 | ||||
DB_remark | PPA-HINT-3 protein; contains similarity to Pfam domain PF11969 (Scavenger mRNA decapping enzyme C-term binding); contains similarity to Interpro domains IPR001310 (Histidine triad (HIT) protein), IPR036265 (HIT-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00091477 | ||||
Corresponding_transcript | PPA01923.1 | |||||
Corresponding_protein | PP12142 | |||||
Corresponding_oligo_set | GPL14372_Probes_62730 | |||||
GPL14372_Probes_62732 | ||||||
GPL14372_Probes_62733 | ||||||
Matching_cDNA | AW097290 | Inferred_automatically | transcript_builder.pl | |||
FG096036 | Inferred_automatically | transcript_builder.pl | ||||
CN657472 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_62730 | |||||
GPL14372_Probes_62732 | ||||||
GPL14372_Probes_62733 | ||||||
RNASeq_FPKM | WBls:0000032 | 66.4534 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 95.3173 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S259-9.18 | Curator_confirmed | WBPerson4055 | |||
Method | curated |