WormBase Tree Display for CDS: PPA01931
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| PPA01931 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (30) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S259-9.14 | ||
| DB_remark | PPA-MANS-2 protein; contains similarity to Pfam domains PF01532 (Glycosyl hydrolase family 47), PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR001382 (Glycoside hydrolase family 47), IPR036026 (Seven-hairpin glycosidases), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR012341 (Six-hairpin glycosidase-like superfamily), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00091485 | ||||
| Corresponding_transcript | PPA01931.1 | |||||
| Corresponding_protein | PP54521 | |||||
| Corresponding_oligo_set (13) | ||||||
| Matching_cDNA | FG096397 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results (13) | ||||||
| RNASeq_FPKM | WBls:0000032 | 3.32115 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 5.22946 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S259-9.14 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
