WormBase Tree Display for CDS: PPA01960
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PPA01960 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 118 | |||
541 | 623 | |||||
850 | 906 | |||||
1561 | 1629 | |||||
2103 | 2182 | |||||
2724 | 2816 | |||||
3210 | 3280 | |||||
3685 | 3764 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-65.23 | ||
TREEFAM | TREEFAM_ID | TF105628 | ||||
DB_remark | PPA-ALGN-14 protein; contains similarity to Pfam domain PF08660 (Oligosaccharide biosynthesis protein Alg14 like); contains similarity to Interpro domain IPR013969 (Oligosaccharide biosynthesis protein Alg14-like) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
End_not_found | ||||||
Visible | Gene | WBGene00091514 | ||||
Corresponding_transcript | PPA01960.1 | |||||
Corresponding_protein | PP15786 | |||||
Corresponding_oligo_set | GPL14372_Probes_79142 | |||||
GPL14372_Probes_79143 | ||||||
Microarray_results | GPL14372_Probes_79142 | |||||
GPL14372_Probes_79143 | ||||||
RNASeq_FPKM | WBls:0000032 | 21.6074 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S41-65.23 | Curator_confirmed | WBPerson4055 | |||
Method | curated |