WormBase Tree Display for CDS: PPA01962
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PPA01962 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (54) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-65.24 | ||
DB_remark | PPA-RBBP-5 protein; contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF00628 (PHD-finger), PF14051 (DPF1-3, N-terminal); contains similarity to Interpro domains IPR025750 (DPF1-3, N-terminal domain), IPR001680 (WD40 repeat), IPR037850 (Retinoblastoma-binding protein 5/Swd1), IPR011011 (Zinc finger, FYVE/PHD-type), IPR019787 (Zinc finger, PHD-finger), IPR001965 (Zinc finger, PHD-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR036322 (WD40-repeat-containing domain superfamily), IPR018391 (Pyrrolo-quinoline quinone beta-propeller repeat), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00091516 | ||||
Corresponding_transcript | PPA01962.1 | |||||
Corresponding_protein | PP53816 | |||||
Corresponding_oligo_set | GPL14372_Probes_25189 | |||||
GPL14372_Probes_25190 | ||||||
GPL14372_Probes_25194 | ||||||
GPL14372_Probes_25195 | ||||||
GPL14372_Probes_25196 | ||||||
Microarray_results | GPL14372_Probes_25189 | |||||
GPL14372_Probes_25190 | ||||||
GPL14372_Probes_25194 | ||||||
GPL14372_Probes_25195 | ||||||
GPL14372_Probes_25196 | ||||||
RNASeq_FPKM | WBls:0000032 | 13.6634 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 13.288 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S41-65.24 | Curator_confirmed | WBPerson4055 | |||
Method | curated |