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WormBase Tree Display for CDS: PPA01962

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Name Class

PPA01962SMapS_parentSequencePPA_ChrII
StructureSource_exons (54)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S41-65.24
DB_remarkPPA-RBBP-5 protein; contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF00628 (PHD-finger), PF14051 (DPF1-3, N-terminal); contains similarity to Interpro domains IPR025750 (DPF1-3, N-terminal domain), IPR001680 (WD40 repeat), IPR037850 (Retinoblastoma-binding protein 5/Swd1), IPR011011 (Zinc finger, FYVE/PHD-type), IPR019787 (Zinc finger, PHD-finger), IPR001965 (Zinc finger, PHD-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR036322 (WD40-repeat-containing domain superfamily), IPR018391 (Pyrrolo-quinoline quinone beta-propeller repeat), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
Start_not_found1
VisibleGeneWBGene00091516
Corresponding_transcriptPPA01962.1
Corresponding_proteinPP53816
Corresponding_oligo_setGPL14372_Probes_25189
GPL14372_Probes_25190
GPL14372_Probes_25194
GPL14372_Probes_25195
GPL14372_Probes_25196
Microarray_resultsGPL14372_Probes_25189
GPL14372_Probes_25190
GPL14372_Probes_25194
GPL14372_Probes_25195
GPL14372_Probes_25196
RNASeq_FPKMWBls:000003213.6634From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010113.288From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S41-65.24Curator_confirmedWBPerson4055
Methodcurated