WormBase Tree Display for CDS: PPA02162
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| PPA02162 | SMap | S_parent | Sequence | PPA_ChrIV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (70) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S2838-3.37 | ||
| DB_remark | PPA-HECD-1 protein; contains similarity to Pfam domains PF00632 (HECT-domain (ubiquitin-transferase)), PF06701 (Mib_herc2), PF07738 (Sad1 / UNC-like C-terminal), PF13857 (Ankyrin repeats (many copies)); contains similarity to Interpro domains IPR012919 (SUN domain), IPR000569 (HECT domain), IPR008979 (Galactose-binding-like domain superfamily), IPR002110 (Ankyrin repeat), IPR035983 (HECT, E3 ligase catalytic domain), IPR011989 (Armadillo-like helical), IPR036770 (Ankyrin repeat-containing domain superfamily), IPR010606 (Mib-herc2), IPR016024 (Armadillo-type fold), IPR037252 (Mib/herc2 domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00091716 | ||||
| Corresponding_transcript | PPA02162.1 | |||||
| Corresponding_protein | PP73154 | |||||
| Corresponding_oligo_set (12) | ||||||
| Matching_cDNA | AI987161 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results (12) | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.416877 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 2.46144 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMA-S2838-3.37 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
