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WormBase Tree Display for CDS: PPA02231

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Name Class

PPA02231SMapS_parentSequencePPA_ChrIV
StructureSource_exons (40)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2838-6.46
DB_remarkPPA-MGL-3 protein; contains similarity to Pfam domains PF00003 (7 transmembrane sweet-taste receptor of 3 GCPR), PF01094 (Receptor family ligand binding region), PF01549 (ShK domain-like), PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF07562 (Nine Cysteines Domain of family 3 GPCR); contains similarity to Interpro domains IPR011500 (GPCR, family 3, nine cysteines domain), IPR000337 (GPCR, family 3), IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR001828 (Receptor, ligand binding region), IPR003582 (ShKT domain), IPR038550 (GPCR, family 3, nine cysteines domain superfamily), IPR028082 (Periplasmic binding protein-like I), IPR017978 (GPCR family 3, C-terminal), IPR000162 (GPCR, family 3, metabotropic glutamate receptor)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00091785
Corresponding_transcriptPPA02231.1
Corresponding_proteinPP55596
Corresponding_oligo_set (12)
Matching_cDNAEB182844Inferred_automaticallytranscript_builder.pl
Microarray_results (12)
RNASeq_FPKMWBls:000003211.1523From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S2838-6.46Curator_confirmedWBPerson4055
Methodcurated