WormBase Tree Display for CDS: PPA02231
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PPA02231 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons (40) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2838-6.46 | ||
DB_remark | PPA-MGL-3 protein; contains similarity to Pfam domains PF00003 (7 transmembrane sweet-taste receptor of 3 GCPR), PF01094 (Receptor family ligand binding region), PF01549 (ShK domain-like), PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF07562 (Nine Cysteines Domain of family 3 GPCR); contains similarity to Interpro domains IPR011500 (GPCR, family 3, nine cysteines domain), IPR000337 (GPCR, family 3), IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR001828 (Receptor, ligand binding region), IPR003582 (ShKT domain), IPR038550 (GPCR, family 3, nine cysteines domain superfamily), IPR028082 (Periplasmic binding protein-like I), IPR017978 (GPCR family 3, C-terminal), IPR000162 (GPCR, family 3, metabotropic glutamate receptor) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00091785 | ||||
Corresponding_transcript | PPA02231.1 | |||||
Corresponding_protein | PP55596 | |||||
Corresponding_oligo_set (12) | ||||||
Matching_cDNA | EB182844 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (12) | ||||||
RNASeq_FPKM | WBls:0000032 | 11.1523 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2838-6.46 | Curator_confirmed | WBPerson4055 | |||
Method | curated |