WormBase Tree Display for CDS: PPA02636
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PPA02636 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (24) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S50-0.25 | ||
TREEFAM | TREEFAM_ID | TF101233 | ||||
DB_remark | PPA-XPB-1 protein; contains similarity to Pfam domains PF04851 (Type III restriction enzyme, res subunit), PF13625 (Helicase conserved C-terminal domain), PF16203 (ERCC3/RAD25/XPB C-terminal helicase); contains similarity to Interpro domains IPR006935 (Helicase/UvrB, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001650 (Helicase, C-terminal domain-like), IPR032438 (ERCC3/RAD25/XPB helicase, C-terminal domain), IPR001161 (Helicase XPB/Ssl2), IPR032830 (Helicase XPB/Ssl2, N-terminal domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00092190 | ||||
Corresponding_transcript | PPA02636.1 | |||||
Corresponding_protein | PP66738 | |||||
Corresponding_oligo_set | GPL14372_Probes_42089 | |||||
GPL14372_Probes_42090 | ||||||
GPL14372_Probes_42091 | ||||||
GPL14372_Probes_42092 | ||||||
GPL14372_Probes_42094 | ||||||
Microarray_results | GPL14372_Probes_42089 | |||||
GPL14372_Probes_42090 | ||||||
GPL14372_Probes_42091 | ||||||
GPL14372_Probes_42092 | ||||||
GPL14372_Probes_42094 | ||||||
RNASeq_FPKM | WBls:0000032 | 25.3672 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.52448 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S50-0.25 | Curator_confirmed | WBPerson4055 | |||
Method | curated |