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WormBase Tree Display for CDS: PPA02636

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Name Class

PPA02636SMapS_parentSequencePPA_ChrIII
StructureSource_exons (24)
DB_infoDatabasepristionchus.orgcdsgene-UMA-S50-0.25
TREEFAMTREEFAM_IDTF101233
DB_remarkPPA-XPB-1 protein; contains similarity to Pfam domains PF04851 (Type III restriction enzyme, res subunit), PF13625 (Helicase conserved C-terminal domain), PF16203 (ERCC3/RAD25/XPB C-terminal helicase); contains similarity to Interpro domains IPR006935 (Helicase/UvrB, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001650 (Helicase, C-terminal domain-like), IPR032438 (ERCC3/RAD25/XPB helicase, C-terminal domain), IPR001161 (Helicase XPB/Ssl2), IPR032830 (Helicase XPB/Ssl2, N-terminal domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00092190
Corresponding_transcriptPPA02636.1
Corresponding_proteinPP66738
Corresponding_oligo_setGPL14372_Probes_42089
GPL14372_Probes_42090
GPL14372_Probes_42091
GPL14372_Probes_42092
GPL14372_Probes_42094
Microarray_resultsGPL14372_Probes_42089
GPL14372_Probes_42090
GPL14372_Probes_42091
GPL14372_Probes_42092
GPL14372_Probes_42094
RNASeq_FPKMWBls:000003225.3672From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.52448From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMA-S50-0.25Curator_confirmedWBPerson4055
Methodcurated