WormBase Tree Display for CDS: PPA02836
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| PPA02836 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (18) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-63.59 | ||
| DB_remark | PPA-PDE-4 protein; contains similarity to Pfam domains PF00233 (3'5'-cyclic nucleotide phosphodiesterase), PF18100 (Phosphodiesterase 4 upstream conserved regions (UCR)); contains similarity to Interpro domains IPR040844 (Phosphodiesterase 4 upstream conserved regions (UCR)), IPR036971 (3'5'-cyclic nucleotide phosphodiesterase, catalytic domain superfamily), IPR023088 (3'5'-cyclic nucleotide phosphodiesterase), IPR002073 (3'5'-cyclic nucleotide phosphodiesterase, catalytic domain), IPR003607 (HD/PDEase domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00092390 | ||||
| Corresponding_transcript | PPA02836.1 | |||||
| Corresponding_protein | PP71211 | |||||
| Corresponding_oligo_set | GPL14372_Probes_16737 | |||||
| GPL14372_Probes_16738 | ||||||
| GPL14372_Probes_16739 | ||||||
| GPL14372_Probes_16740 | ||||||
| GPL14372_Probes_16741 | ||||||
| GPL14372_Probes_16742 | ||||||
| Microarray_results | GPL14372_Probes_16737 | |||||
| GPL14372_Probes_16738 | ||||||
| GPL14372_Probes_16739 | ||||||
| GPL14372_Probes_16740 | ||||||
| GPL14372_Probes_16741 | ||||||
| GPL14372_Probes_16742 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S10-63.59 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
