WormBase Tree Display for CDS: PPA02878
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PPA02878 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (40) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-66.8 | ||
DB_remark | PPA-GLDC-1 protein; contains similarity to Pfam domains PF00226 (DnaJ domain), PF01556 (DnaJ C terminal domain), PF02347 (Glycine cleavage system P-protein); contains similarity to Interpro domains IPR008971 (HSP40/DnaJ peptide-binding), IPR002939 (Chaperone DnaJ, C-terminal), IPR001623 (DnaJ domain), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR015421 (Pyridoxal phosphate-dependent transferase, major domain), IPR020581 (Glycine cleavage system P protein), IPR036869 (Chaperone J-domain superfamily), IPR015422 (Pyridoxal phosphate-dependent transferase, small domain), IPR003437 (Glycine dehydrogenase (decarboxylating)) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00092432 | ||||
Corresponding_transcript | PPA02878.1 | |||||
Corresponding_protein | PP51447 | |||||
Corresponding_oligo_set | GPL14372_Probes_65763 | |||||
GPL14372_Probes_65764 | ||||||
GPL14372_Probes_65765 | ||||||
GPL14372_Probes_65767 | ||||||
GPL14372_Probes_65769 | ||||||
GPL14372_Probes_65771 | ||||||
GPL14372_Probes_65772 | ||||||
Microarray_results | GPL14372_Probes_65763 | |||||
GPL14372_Probes_65764 | ||||||
GPL14372_Probes_65765 | ||||||
GPL14372_Probes_65767 | ||||||
GPL14372_Probes_65769 | ||||||
GPL14372_Probes_65771 | ||||||
GPL14372_Probes_65772 | ||||||
RNASeq_FPKM | WBls:0000032 | 2.66595 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 16.7909 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-66.8 | Curator_confirmed | WBPerson4055 | |||
Method | curated |