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WormBase Tree Display for CDS: PPA02893

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Name Class

PPA02893SMapS_parentSequencePPA_ChrII
StructureSource_exons (13)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S10-66.13
DB_remarkPPA-BEN-1 protein; contains similarity to Pfam domains PF00010 (Helix-loop-helix DNA-binding domain), PF00091 (Tubulin/FtsZ family, GTPase domain); contains similarity to Interpro domains IPR000217 (Tubulin), IPR003008 (Tubulin/FtsZ, GTPase domain), IPR023123 (Tubulin, C-terminal), IPR002453 (Beta tubulin), IPR036525 (Tubulin/FtsZ, GTPase domain superfamily), IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR008280 (Tubulin/FtsZ, C-terminal)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00092447
Corresponding_transcriptPPA02893.1
Corresponding_proteinPP66124
Corresponding_oligo_setGPL14372_Probes_65807
Matching_cDNAFG099691Inferred_automaticallytranscript_builder.pl
FG096882Inferred_automaticallytranscript_builder.pl
FG098498Inferred_automaticallytranscript_builder.pl
FG095409Inferred_automaticallytranscript_builder.pl
FG095407Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_65807
RNASeq_FPKMWBls:00000322.38988From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001018.46766From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S10-66.13Curator_confirmedWBPerson4055
Methodcurated