WormBase Tree Display for CDS: PPA02893
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PPA02893 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (13) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-66.13 | ||
DB_remark | PPA-BEN-1 protein; contains similarity to Pfam domains PF00010 (Helix-loop-helix DNA-binding domain), PF00091 (Tubulin/FtsZ family, GTPase domain); contains similarity to Interpro domains IPR000217 (Tubulin), IPR003008 (Tubulin/FtsZ, GTPase domain), IPR023123 (Tubulin, C-terminal), IPR002453 (Beta tubulin), IPR036525 (Tubulin/FtsZ, GTPase domain superfamily), IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR008280 (Tubulin/FtsZ, C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00092447 | ||||
Corresponding_transcript | PPA02893.1 | |||||
Corresponding_protein | PP66124 | |||||
Corresponding_oligo_set | GPL14372_Probes_65807 | |||||
Matching_cDNA | FG099691 | Inferred_automatically | transcript_builder.pl | |||
FG096882 | Inferred_automatically | transcript_builder.pl | ||||
FG098498 | Inferred_automatically | transcript_builder.pl | ||||
FG095409 | Inferred_automatically | transcript_builder.pl | ||||
FG095407 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_65807 | |||||
RNASeq_FPKM | WBls:0000032 | 2.38988 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 8.46766 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-66.13 | Curator_confirmed | WBPerson4055 | |||
Method | curated |