WormBase Tree Display for CDS: PPA02991
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PPA02991 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (31) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-64.14 | ||
TREEFAM | TREEFAM_ID | TF318600 | ||||
DB_remark | contains similarity to Pfam domain PF00112 (Papain family cysteine protease); contains similarity to Interpro domains IPR038765 (Papain-like cysteine peptidase superfamily), IPR013201 (Cathepsin propeptide inhibitor domain (I29)), IPR003961 (Fibronectin type III), IPR000668 (Peptidase C1A, papain C-terminal), IPR036116 (Fibronectin type III superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00092545 | ||||
Corresponding_transcript | PPA02991.1 | |||||
Corresponding_protein | PP60808 | |||||
Corresponding_oligo_set (11) | ||||||
Microarray_results (11) | ||||||
RNASeq_FPKM | WBls:0000032 | 1.28397 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 10.6142 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-64.14 | Curator_confirmed | WBPerson4055 | |||
Method | curated |