WormBase Tree Display for CDS: PPA03057
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PPA03057 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (13) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-60.12 | ||
TREEFAM | TREEFAM_ID | TF313459 | ||||
DB_remark | contains similarity to Pfam domains PF00248 (Aldo/keto reductase family), PF00857 (Isochorismatase family); contains similarity to Interpro domains IPR000868 (Isochorismatase-like), IPR036812 (NADP-dependent oxidoreductase domain superfamily), IPR020471 (Aldo-keto reductase), IPR023210 (NADP-dependent oxidoreductase domain), IPR036380 (Isochorismatase-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00092611 | ||||
Corresponding_transcript | PPA03057.1 | |||||
Corresponding_protein | PP59814 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-60.12 | Curator_confirmed | WBPerson4055 | |||
Method | curated |