WormBase Tree Display for CDS: PPA03909
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PPA03909 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 24 | |||
877 | 940 | |||||
2813 | 2931 | |||||
3322 | 3433 | |||||
4007 | 4100 | |||||
4389 | 4471 | |||||
4962 | 5030 | |||||
5690 | 5772 | |||||
13193 | 13271 | |||||
13371 | 13390 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-4.7 | ||
DB_remark | PPA-GSP-1 protein; contains similarity to Pfam domain PF00149 (Calcineurin-like phosphoesterase); contains similarity to Interpro domains IPR029052 (Metallo-dependent phosphatase-like), IPR006186 (Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase), IPR004843 (Calcineurin-like phosphoesterase domain, ApaH type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00093463 | ||||
Corresponding_transcript | PPA03909.1 | |||||
Corresponding_protein | PP57665 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-4.7 | Curator_confirmed | WBPerson4055 | |||
Method | curated |