WormBase Tree Display for CDS: PPA04131

PPA04131 SMap: S_parent: Sequence: PPA_ChrII
  Structure: Source_exons (55)
  DB_info: Database: pristionchus.org cds gene-UMA-S41-33.38
    DB_remark: PPA-EAT-3 protein; contains similarity to Pfam domains PF00350 (Dynamin family), PF01398 (JAB1/Mov34/MPN/PAD-1 ubiquitin protease), PF02893 (GRAM domain), PF13012 (Maintenance of mitochondrial structure and function); contains similarity to Interpro domains IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR033047 (), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001401 (Dynamin, GTPase domain), IPR004182 (GRAM domain), IPR022812 (Dynamin), IPR024969 (EIF3F/CSN6-like, C-terminal)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00093685
    Corresponding_transcript: PPA04131.1
    Corresponding_protein: PP66391
    Corresponding_oligo_set: GPL14372_Probes_29328
      GPL14372_Probes_29329
      GPL14372_Probes_70620
      GPL14372_Probes_80598
      GPL14372_Probes_80599
      GPL14372_Probes_85306
      GPL14372_Probes_85307
      GPL14372_Probes_85311
    Matching_cDNA: CN657813 Inferred_automatically: transcript_builder.pl
      CN657164 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14372_Probes_29328
      GPL14372_Probes_29329
      GPL14372_Probes_70620
      GPL14372_Probes_80598
      GPL14372_Probes_80599
      GPL14372_Probes_85306
      GPL14372_Probes_85307
      GPL14372_Probes_85311
    RNASeq_FPKM: WBls:0000032 8.24403 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 13.2757 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Remark: [171116 mh6] renamed from gene-UMA-S41-33.38 Curator_confirmed: WBPerson4055
  Method: curated