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WormBase Tree Display for CDS: PPA04246

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Name Class

PPA04246SMapS_parentSequencePPA_ChrIV
StructureSource_exons (78)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S283-12.22
TREEFAMTREEFAM_IDTF300606
DB_remarkcontains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain), PF04192 (Utp21 specific WD40 associated putative domain), PF05060 (N-acetylglucosaminyltransferase II (MGAT2)), PF13360 (PQQ-like domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR001680 (WD40 repeat), IPR029044 (Nucleotide-diphospho-sugar transferases), IPR008160 (Collagen triple helix repeat), IPR002372 (Pyrrolo-quinoline quinone repeat), IPR007754 (N-acetylglucosaminyltransferase II), IPR036322 (WD40-repeat-containing domain superfamily), IPR007319 (Small-subunit processome, Utp21), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00093800
Corresponding_transcriptPPA04246.1
Corresponding_proteinPP55760
Corresponding_oligo_set (23)
Matching_cDNABM320336Inferred_automaticallytranscript_builder.pl
FG103810Inferred_automaticallytranscript_builder.pl
BM320743Inferred_automaticallytranscript_builder.pl
EB182662Inferred_automaticallytranscript_builder.pl
Microarray_results (23)
RNASeq_FPKMWBls:000003242.7081From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010138.8294From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S283-12.22Curator_confirmedWBPerson4055
Methodcurated