WormBase Tree Display for CDS: PPA04246
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PPA04246 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons (78) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S283-12.22 | ||
TREEFAM | TREEFAM_ID | TF300606 | ||||
DB_remark | contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain), PF04192 (Utp21 specific WD40 associated putative domain), PF05060 (N-acetylglucosaminyltransferase II (MGAT2)), PF13360 (PQQ-like domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR001680 (WD40 repeat), IPR029044 (Nucleotide-diphospho-sugar transferases), IPR008160 (Collagen triple helix repeat), IPR002372 (Pyrrolo-quinoline quinone repeat), IPR007754 (N-acetylglucosaminyltransferase II), IPR036322 (WD40-repeat-containing domain superfamily), IPR007319 (Small-subunit processome, Utp21), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00093800 | ||||
Corresponding_transcript | PPA04246.1 | |||||
Corresponding_protein | PP55760 | |||||
Corresponding_oligo_set (23) | ||||||
Matching_cDNA | BM320336 | Inferred_automatically | transcript_builder.pl | |||
FG103810 | Inferred_automatically | transcript_builder.pl | ||||
BM320743 | Inferred_automatically | transcript_builder.pl | ||||
EB182662 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results (23) | ||||||
RNASeq_FPKM | WBls:0000032 | 42.7081 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 38.8294 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S283-12.22 | Curator_confirmed | WBPerson4055 | |||
Method | curated |