WormBase Tree Display for CDS: PPA04487
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| PPA04487 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (36) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S7-81.69 | ||
| DB_remark | contains similarity to Pfam domains PF00106 (short chain dehydrogenase), PF00149 (Calcineurin-like phosphoesterase); contains similarity to Interpro domains IPR029052 (Metallo-dependent phosphatase-like), IPR036291 (NAD(P)-binding domain superfamily), IPR002347 (Short-chain dehydrogenase/reductase SDR), IPR006186 (Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase), IPR004843 (Calcineurin-like phosphoesterase domain, ApaH type) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00094041 | ||||
| Corresponding_transcript | PPA04487.1 | |||||
| Corresponding_protein | PP59368 | |||||
| Corresponding_oligo_set | GPL14372_Probes_13431 | |||||
| GPL14372_Probes_13432 | ||||||
| GPL14372_Probes_13433 | ||||||
| GPL14372_Probes_13434 | ||||||
| GPL14372_Probes_13435 | ||||||
| GPL14372_Probes_60226 | ||||||
| Microarray_results | GPL14372_Probes_13431 | |||||
| GPL14372_Probes_13432 | ||||||
| GPL14372_Probes_13433 | ||||||
| GPL14372_Probes_13434 | ||||||
| GPL14372_Probes_13435 | ||||||
| GPL14372_Probes_60226 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S7-81.69 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
