WormBase Tree Display for CDS: PPA05126
expand all nodes | collapse all nodes | view schema
PPA05126 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 67 | |||
435 | 499 | |||||
899 | 1022 | |||||
1188 | 1257 | |||||
1475 | 1559 | |||||
1964 | 2008 | |||||
2719 | 2823 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-31.15 | ||
DB_remark | PPA-HER-1.2 protein; contains similarity to Pfam domain PF09232 (Caenorhabditis elegans Her-1); contains similarity to Interpro domains IPR015313 (Protein Her-1), IPR036341 (Her-1 superfamily), IPR043108 (Her-1, C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00094680 | ||||
Corresponding_transcript | PPA05126.1 | |||||
Corresponding_protein | PP58845 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 10.6471 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2844-31.15 | Curator_confirmed | WBPerson4055 | |||
Method | curated |