WormBase Tree Display for CDS: PPA05186
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PPA05186 | SMap | S_parent | Sequence | PPA_ChrV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 88 | |||
430 | 501 | |||||
572 | 660 | |||||
830 | 922 | |||||
1031 | 1085 | |||||
1137 | 1198 | |||||
1354 | 1413 | |||||
1515 | 1590 | |||||
1739 | 1811 | |||||
1958 | 2018 | |||||
2109 | 2156 | |||||
2226 | 2321 | |||||
2764 | 2895 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2868-4.58 | ||
DB_remark | PPA-UNC-95 protein; contains similarity to Pfam domain PF00412 (LIM domain); contains similarity to Interpro domain IPR001781 (Zinc finger, LIM-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00094740 | ||||
Corresponding_transcript | PPA05186.1 | |||||
Corresponding_protein | PP19695 | |||||
Corresponding_oligo_set | GPL14372_Probes_57556 | |||||
GPL14372_Probes_57558 | ||||||
GPL14372_Probes_57559 | ||||||
GPL14372_Probes_57560 | ||||||
Microarray_results | GPL14372_Probes_57556 | |||||
GPL14372_Probes_57558 | ||||||
GPL14372_Probes_57559 | ||||||
GPL14372_Probes_57560 | ||||||
RNASeq_FPKM | WBls:0000032 | 4.02499 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 47.542 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2868-4.58 | Curator_confirmed | WBPerson4055 | |||
Method | curated |