WormBase Tree Display for CDS: PPA05279
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PPA05279 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (66) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-25.1 | ||
DB_remark | contains similarity to Pfam domains PF00014 (Kunitz/Bovine pancreatic trypsin inhibitor domain), PF00083 (Sugar (and other) transporter); contains similarity to Interpro domains IPR001881 (EGF-like calcium-binding domain), IPR036880 (Pancreatic trypsin inhibitor Kunitz domain superfamily), IPR036259 (MFS transporter superfamily), IPR002223 (Pancreatic trypsin inhibitor Kunitz domain), IPR005828 (Major facilitator, sugar transporter-like) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00094833 | ||||
Corresponding_transcript | PPA05279.1 | |||||
Corresponding_protein | PP65236 | |||||
Corresponding_oligo_set | GPL14372_Probes_50481 | |||||
GPL14372_Probes_50482 | ||||||
GPL14372_Probes_6723 | ||||||
GPL14372_Probes_6724 | ||||||
GPL14372_Probes_6725 | ||||||
GPL14372_Probes_6728 | ||||||
GPL14372_Probes_6729 | ||||||
GPL14372_Probes_6730 | ||||||
Microarray_results | GPL14372_Probes_6723 | |||||
GPL14372_Probes_6724 | ||||||
GPL14372_Probes_6725 | ||||||
GPL14372_Probes_6728 | ||||||
GPL14372_Probes_6729 | ||||||
GPL14372_Probes_6730 | ||||||
GPL14372_Probes_50481 | ||||||
GPL14372_Probes_50482 | ||||||
RNASeq_FPKM | WBls:0000032 | 3.56117 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-25.1 | Curator_confirmed | WBPerson4055 | |||
Method | curated |