WormBase Tree Display for CDS: PPA05291
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PPA05291 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 82 | |||
458 | 580 | |||||
679 | 777 | |||||
823 | 926 | |||||
971 | 1018 | |||||
1064 | 1182 | |||||
1229 | 1382 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-24.19 | ||
TREEFAM | TREEFAM_ID | TF314222 | ||||
DB_remark | contains similarity to Pfam domain PF03188 (Eukaryotic cytochrome b561); contains similarity to Interpro domains IPR043205 (Cytochrome b561/Cytochrome b reductase 1-like), IPR006593 (Cytochrome b561/ferric reductase transmembrane) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00094845 | ||||
Corresponding_transcript | PPA05291.1 | |||||
Corresponding_protein | PP18711 | |||||
Corresponding_oligo_set | GPL14372_Probes_50434 | |||||
GPL14372_Probes_50435 | ||||||
GPL14372_Probes_50436 | ||||||
GPL14372_Probes_50437 | ||||||
GPL14372_Probes_50438 | ||||||
Microarray_results | GPL14372_Probes_50434 | |||||
GPL14372_Probes_50435 | ||||||
GPL14372_Probes_50436 | ||||||
GPL14372_Probes_50437 | ||||||
GPL14372_Probes_50438 | ||||||
RNASeq_FPKM | WBls:0000032 | 24.5411 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 50.7347 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-24.19 | Curator_confirmed | WBPerson4055 | |||
Method | curated |