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WormBase Tree Display for CDS: PPA05453

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Name Class

PPA05453SMapS_parentSequencePPA_ChrI
StructureSource_exons199
565768
9011002
11661270
DB_infoDatabasepristionchus.orgcdsgene-UMA-S71-45.33
TREEFAMTREEFAM_IDTF354233
DB_remarkcontains similarity to Pfam domains PF01466 (Skp1 family, dimerisation domain), PF03931 (Skp1 family, tetramerisation domain); contains similarity to Interpro domains IPR001232 (S-phase kinase-associated protein 1-like), IPR036296 (SKP1-like, dimerisation domain superfamily), IPR016072 (SKP1 component, dimerisation), IPR016897 (S-phase kinase-associated protein 1), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR016073 (SKP1 component, POZ domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00095007
Corresponding_transcriptPPA05453.1
Corresponding_proteinPP27869
Corresponding_oligo_setGPL14372_Probes_56168
GPL14372_Probes_56169
GPL14372_Probes_56170
GPL14372_Probes_56171
Microarray_resultsGPL14372_Probes_56168
GPL14372_Probes_56169
GPL14372_Probes_56170
GPL14372_Probes_56171
RNASeq_FPKMWBls:000003210.506From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010124.8292From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMA-S71-45.33Curator_confirmedWBPerson4055
Methodcurated