WormBase Tree Display for CDS: PPA05874
expand all nodes | collapse all nodes | view schema
PPA05874 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons (13) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2838-18.21 | ||
TREEFAM | TREEFAM_ID | TF105020 | ||||
DB_remark | PPA-ACDH-8 protein; contains similarity to Pfam domains PF00441 (Acyl-CoA dehydrogenase, C-terminal domain), PF02770 (Acyl-CoA dehydrogenase, middle domain), PF02771 (Acyl-CoA dehydrogenase, N-terminal domain); contains similarity to Interpro domains IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase, C-terminal), IPR006091 (Acyl-CoA oxidase/dehydrogenase, middle domain), IPR036250 (Acyl-CoA dehydrogenase-like, C-terminal), IPR037069 (Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00095428 | ||||
Corresponding_transcript | PPA05874.1 | |||||
Corresponding_protein | PP29471 | |||||
Corresponding_oligo_set | GPL14372_Probes_45186 | |||||
GPL14372_Probes_45187 | ||||||
GPL14372_Probes_45188 | ||||||
Matching_cDNA | AW114683 | Inferred_automatically | transcript_builder.pl | |||
AW097235 | Inferred_automatically | transcript_builder.pl | ||||
DV018737 | Inferred_automatically | transcript_builder.pl | ||||
EB183434 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_45186 | |||||
GPL14372_Probes_45187 | ||||||
GPL14372_Probes_45188 | ||||||
RNASeq_FPKM | WBls:0000032 | 2.91119 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 48.137 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2838-18.21 | Curator_confirmed | WBPerson4055 | |||
Method | curated |