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WormBase Tree Display for CDS: PPA05874

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Name Class

PPA05874SMapS_parentSequencePPA_ChrIV
StructureSource_exons (13)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2838-18.21
TREEFAMTREEFAM_IDTF105020
DB_remarkPPA-ACDH-8 protein; contains similarity to Pfam domains PF00441 (Acyl-CoA dehydrogenase, C-terminal domain), PF02770 (Acyl-CoA dehydrogenase, middle domain), PF02771 (Acyl-CoA dehydrogenase, N-terminal domain); contains similarity to Interpro domains IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase, C-terminal), IPR006091 (Acyl-CoA oxidase/dehydrogenase, middle domain), IPR036250 (Acyl-CoA dehydrogenase-like, C-terminal), IPR037069 (Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00095428
Corresponding_transcriptPPA05874.1
Corresponding_proteinPP29471
Corresponding_oligo_setGPL14372_Probes_45186
GPL14372_Probes_45187
GPL14372_Probes_45188
Matching_cDNAAW114683Inferred_automaticallytranscript_builder.pl
AW097235Inferred_automaticallytranscript_builder.pl
DV018737Inferred_automaticallytranscript_builder.pl
EB183434Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_45186
GPL14372_Probes_45187
GPL14372_Probes_45188
RNASeq_FPKMWBls:00000322.91119From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010148.137From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S2838-18.21Curator_confirmedWBPerson4055
Methodcurated