WormBase Tree Display for CDS: PPA06322
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| PPA06322 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (68) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2842-11.30 | ||
| DB_remark | contains similarity to Pfam domains PF17171 (Glutathione S-transferase, C-terminal domain), PF17172 (Glutathione S-transferase N-terminal domain); contains similarity to Interpro domains IPR033468 (Metaxin, glutathione S-transferase domain), IPR001356 (Homeobox domain), IPR012336 (Thioredoxin-like fold), IPR036282 (Glutathione S-transferase, C-terminal domain superfamily), IPR036249 (Thioredoxin-like superfamily), IPR009057 (Homeobox-like domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00095876 | ||||
| Corresponding_transcript | PPA06322.1 | |||||
| Corresponding_protein | PP52994 | |||||
| Corresponding_oligo_set | GPL14372_Probes_61128 | |||||
| GPL14372_Probes_61129 | ||||||
| GPL14372_Probes_61130 | ||||||
| GPL14372_Probes_61132 | ||||||
| GPL14372_Probes_61134 | ||||||
| Microarray_results | GPL14372_Probes_61128 | |||||
| GPL14372_Probes_61129 | ||||||
| GPL14372_Probes_61130 | ||||||
| GPL14372_Probes_61132 | ||||||
| GPL14372_Probes_61134 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S2842-11.30 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
