WormBase Tree Display for CDS: PPA06336
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PPA06336 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 87 | |||
174 | 245 | |||||
500 | 556 | |||||
733 | 789 | |||||
1449 | 1526 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2842-11.40 | ||
DB_remark | contains similarity to Interpro domains IPR011001 (Saposin-like), IPR008139 (Saposin B type domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00095890 | ||||
Corresponding_transcript | PPA06336.1 | |||||
Corresponding_protein | PP18625 | |||||
Corresponding_oligo_set | GPL14372_Probes_61146 | |||||
GPL14372_Probes_61147 | ||||||
Matching_cDNA | BM566324 | Inferred_automatically | transcript_builder.pl | |||
FG098446 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_61146 | |||||
GPL14372_Probes_61147 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 15.6815 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2842-11.40 | Curator_confirmed | WBPerson4055 | |||
Method | curated |