WormBase Tree Display for CDS: PPA06787
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| PPA06787 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (13) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S41-3.25 | ||
| TREEFAM | TREEFAM_ID | TF300391 | ||||
| DB_remark | PPA-ENOL-1 protein; contains similarity to Pfam domains PF00113 (Enolase, C-terminal TIM barrel domain), PF03952 (Enolase, N-terminal domain); contains similarity to Interpro domains IPR020810 (Enolase, C-terminal TIM barrel domain), IPR029017 (Enolase-like, N-terminal), IPR000941 (Enolase), IPR036849 (Enolase-like, C-terminal domain superfamily), IPR020811 (Enolase, N-terminal) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00096341 | ||||
| Corresponding_transcript | PPA06787.1 | |||||
| Corresponding_protein | PP66957 | |||||
| Corresponding_oligo_set | GPL14372_Probes_85650 | |||||
| GPL14372_Probes_85651 | ||||||
| Matching_cDNA | AI989027 | Inferred_automatically | transcript_builder.pl | |||
| FE940965 | Inferred_automatically | transcript_builder.pl | ||||
| FE938071 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_85650 | |||||
| GPL14372_Probes_85651 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 3.60748 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S41-3.25 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
