WormBase Tree Display for CDS: PPA06809
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| PPA06809 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (26) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S41-2.55 | ||
| DB_remark | contains similarity to Pfam domains PF06650 (Vacuolar-sorting associated protein 13, adaptor binding domain), PF16909 (Vacuolar-sorting-associated 13 protein, DH-like domain); contains similarity to Interpro domains IPR026847 (Vacuolar protein sorting-associated protein 13), IPR031645 (Vacuolar protein sorting-associated protein 13, DH-like domain), IPR009543 (Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00096363 | ||||
| Corresponding_transcript | PPA06809.1 | |||||
| Corresponding_protein | PP56911 | |||||
| Corresponding_oligo_set | GPL14372_Probes_29507 | |||||
| GPL14372_Probes_29508 | ||||||
| GPL14372_Probes_29509 | ||||||
| GPL14372_Probes_29510 | ||||||
| GPL14372_Probes_29511 | ||||||
| GPL14372_Probes_29512 | ||||||
| GPL14372_Probes_29513 | ||||||
| GPL14372_Probes_29514 | ||||||
| GPL14372_Probes_29515 | ||||||
| Microarray_results | GPL14372_Probes_29507 | |||||
| GPL14372_Probes_29508 | ||||||
| GPL14372_Probes_29509 | ||||||
| GPL14372_Probes_29510 | ||||||
| GPL14372_Probes_29511 | ||||||
| GPL14372_Probes_29512 | ||||||
| GPL14372_Probes_29513 | ||||||
| GPL14372_Probes_29514 | ||||||
| GPL14372_Probes_29515 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S41-2.55 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
