WormBase Tree Display for CDS: PPA06882
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PPA06882 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (157) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-20.43 | ||
DB_remark | PPA-PSMD-9 protein; contains similarity to Pfam domains PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd), PF18265 (Nas2 N_terminal domain); contains similarity to Interpro domains IPR040815 (Nas2, N-terminal), IPR036034 (PDZ superfamily), IPR033489 (), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00096436 | ||||
Corresponding_transcript | PPA06882.1 | |||||
Corresponding_protein | PP68730 | |||||
Corresponding_oligo_set (34) | ||||||
Matching_cDNA | FG103491 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (34) | ||||||
RNASeq_FPKM | WBls:0000032 | 2.33233 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 11.7679 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-20.43 | Curator_confirmed | WBPerson4055 | |||
Method | curated |