WormBase Tree Display for CDS: PPA06902
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PPA06902 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (11) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S139-21.25 | ||
DB_remark | PPA-SELT-1.1 protein; contains similarity to Pfam domain PF10262 (Rdx family); contains similarity to Interpro domains IPR011893 (Selenoprotein, Rdx-type), IPR019389 (Selenoprotein T), IPR036249 (Thioredoxin-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00096456 | ||||
Corresponding_transcript | PPA06902.1 | |||||
Corresponding_protein | PP56445 | |||||
Matching_cDNA | AW114746 | Inferred_automatically | transcript_builder.pl | |||
RNASeq_FPKM | WBls:0000032 | 57.651 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 89.5938 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S139-21.25 | Curator_confirmed | WBPerson4055 | |||
Method | curated |