WormBase Tree Display for CDS: PPA06905
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| PPA06905 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (30) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S139-21.9 | ||
| TREEFAM | TREEFAM_ID | TF101153 | ||||
| DB_remark | PPA-CUL-4 protein; contains similarity to Pfam domains PF00888 (Cullin family), PF10557 (Cullin protein neddylation domain); contains similarity to Interpro domains IPR033044 (), IPR016158 (Cullin homology domain), IPR036317 (Cullin homology domain superfamily), IPR016159 (Cullin repeat-like-containing domain superfamily), IPR036390 (Winged helix DNA-binding domain superfamily), IPR019559 (Cullin protein, neddylation domain), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR001373 (Cullin, N-terminal) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00096459 | ||||
| Corresponding_transcript | PPA06905.1 | |||||
| Corresponding_protein | PP60042 | |||||
| Corresponding_oligo_set | GPL14372_Probes_54570 | |||||
| GPL14372_Probes_54571 | ||||||
| GPL14372_Probes_54572 | ||||||
| GPL14372_Probes_54573 | ||||||
| GPL14372_Probes_54575 | ||||||
| GPL14372_Probes_54576 | ||||||
| GPL14372_Probes_54577 | ||||||
| GPL14372_Probes_54578 | ||||||
| GPL14372_Probes_54579 | ||||||
| GPL14372_Probes_54580 | ||||||
| Matching_cDNA | FG094706 | Inferred_automatically | transcript_builder.pl | |||
| FE938905 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_54570 | |||||
| GPL14372_Probes_54571 | ||||||
| GPL14372_Probes_54572 | ||||||
| GPL14372_Probes_54573 | ||||||
| GPL14372_Probes_54575 | ||||||
| GPL14372_Probes_54576 | ||||||
| GPL14372_Probes_54577 | ||||||
| GPL14372_Probes_54578 | ||||||
| GPL14372_Probes_54579 | ||||||
| GPL14372_Probes_54580 | ||||||
| RNASeq_FPKM | WBls:0000032 | 25.1202 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 38.5656 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S139-21.9 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
